Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
---
name: omero-integration
description: Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
license: Unknown
required_environment_variables: [{"name": "OMERO_HOST", "prompt": "OMERO server hostname.", "required_for": "full functionality"}, {"name": "OMERO_PORT", "prompt": "OMERO server port (default 4064).", "required_for": "optional features"}, {"name": "OMERO_USER", "prompt": "OMERO username.", "required_for": "full functionality"}, {"name": "OMERO_PASSWORD", "prompt": "OMERO password.", "required_for": "full functionality"}]
metadata: {"version": "1.1", "skill-author": "K-Dense Inc.", "openclaw": {"envVars": [{"name": "OMERO_HOST", "required": true, "description": "OMERO server hostname."}, {"name": "OMERO_PORT", "required": false, "description": "OMERO server port (default 4064)."}, {"name": "OMERO_USER", "required": true, "description": "OMERO username."}, {"name": "OMERO_PASSWORD", "required": true, "description": "OMERO password."}]}}
---
# OMERO Integration
## Overview
OMERO is an open-source platform for managing, visualizing, and analyzing microscopy images and metadata. Access images via Python API, retrieve datasets, analyze pixels, manage ROIs and annotations, for high-content screening and microscopy workflows.
## When to Use This Skill
This skill should be used when:
- Working with OMERO Python API (omero-py) to access microscopy data
- Retrieving images, datasets, projects, or screening data programmatically
- Analyzing pixel data and creating derived images
- Creating or managing ROIs (regions of interest) on microscopy images
- Adding annotations, tags, or metadata to OMERO objects
- Storing measurement results in OMERO tables
- Creating server-side scripts for batch processing
- Performing high-content screening analysis… load the full skill through Skill Me